diff --git a/CommonUI/src/Components/Markdown.tsx/MarkdownViewer.tsx b/CommonUI/src/Components/Markdown.tsx/MarkdownViewer.tsx
index 8139fa660c..e851d4c480 100644
--- a/CommonUI/src/Components/Markdown.tsx/MarkdownViewer.tsx
+++ b/CommonUI/src/Components/Markdown.tsx/MarkdownViewer.tsx
@@ -3,9 +3,8 @@ import React, { FunctionComponent, ReactElement } from "react";
 import ReactMarkdown from "react-markdown";
 // https://github.com/remarkjs/remark-gfm
 import remarkGfm from "remark-gfm";
-import {Prism as SyntaxHighlighter} from 'react-syntax-highlighter'
-import {dark} from 'react-syntax-highlighter/dist/esm/styles/prism'
-
+import { Prism as SyntaxHighlighter } from "react-syntax-highlighter";
+import { a11yDark } from "react-syntax-highlighter/dist/esm/styles/prism";
 
 export interface ComponentProps {
   text: string;
@@ -78,23 +77,28 @@ const MarkdownViewer: FunctionComponent<ComponentProps> = (
           ul: ({ ...props }: any) => {
             return <ul className="list-disc px-6 m-1" {...props} />;
           },
-          code: (props) => {
-            const {children, className, node, ...rest} = props
-            const match = /language-(\w+)/.exec(className || '')
+          code: (props: any) => {
+            const { children, className, ...rest } = props;
+            const match: RegExpExecArray | null = /language-(\w+)/.exec(
+              className || "",
+            );
+
+            const content: string = String(children).replace(/\n$/, ""); 
+
             return match ? (
               <SyntaxHighlighter
                 {...rest}
                 PreTag="div"
-                children={String(children).replace(/\n$/, '')}
+                children={content}
                 language={match[1]}
-                style={dark}
+                style={a11yDark}
               />
             ) : (
               <code {...rest} className={className}>
                 {children}
               </code>
-            )
-          }
+            );
+          },
         }}
         remarkPlugins={[remarkGfm]}
       >
diff --git a/Copilot/Init.ts b/Copilot/Init.ts
index 1b46b02f63..0425b306de 100644
--- a/Copilot/Init.ts
+++ b/Copilot/Init.ts
@@ -347,7 +347,7 @@ const setUpRepository: PromiseVoidFunction = async (): Promise<void> => {
 
   logger.info(
     "Repository setup PR created - #" +
-      pullRequest.pullRequestId +
+      pullRequest.pullRequestNumber +
       ". Please megre this PR to continue using Copilot. Exiting..",
   );
 
diff --git a/Copilot/Utils/CodeRepository.ts b/Copilot/Utils/CodeRepository.ts
index 4abbf128d3..bd4cd763b1 100644
--- a/Copilot/Utils/CodeRepository.ts
+++ b/Copilot/Utils/CodeRepository.ts
@@ -102,12 +102,14 @@ export default class CodeRepositoryUtil {
       throw new BadDataException("Repository Name is required");
     }
 
-    if (!this.gitHubUtil) {
+    const githubUtil: GitHubUtil = this.getGitHubUtil();
+
+    if (!githubUtil) {
       throw new BadDataException("GitHub Util is required");
     }
 
     const pullRequest: PullRequest | undefined =
-      await this.gitHubUtil.getPullRequestByNumber({
+      await githubUtil.getPullRequestByNumber({
         organizationName:
           this.codeRepositoryResult.codeRepository.organizationName,
         repositoryName: this.codeRepositoryResult.codeRepository.repositoryName,
@@ -135,7 +137,9 @@ export default class CodeRepositoryUtil {
       "/usr/src/app/Templates/.oneuptime",
     );
 
-    const repoPath: string = this.getLocalRepositoryPath();
+    const oneUptimeConfigPath: string = LocalFile.sanitizeFilePath(
+      this.getLocalRepositoryPath() + "/.oneuptime",
+    );
 
     // create a new branch called oneuptime-copilot-setup
 
@@ -145,9 +149,11 @@ export default class CodeRepositoryUtil {
       branchName: branchName,
     });
 
+    await LocalFile.makeDirectory(oneUptimeConfigPath);
+
     await LocalFile.copyDirectory({
       source: templateFolderPath,
-      destination: repoPath,
+      destination: oneUptimeConfigPath,
     });
 
     // add all the files to the git.
@@ -277,7 +283,11 @@ export default class CodeRepositoryUtil {
   }
 
   public static async executeScript(data: { script: string }): Promise<string> {
-    const commands: Array<string> = data.script.split("\n");
+    const commands: Array<string> = data.script
+      .split("\n")
+      .filter((command: string) => {
+        return command.trim() !== "" && !command.startsWith("#");
+      });
 
     const results: Array<string> = [];
 
diff --git a/Dashboard/src/Components/CodeRepository/PullRequestView.tsx b/Dashboard/src/Components/CodeRepository/PullRequestView.tsx
index 15953e42f3..d3d99e171d 100644
--- a/Dashboard/src/Components/CodeRepository/PullRequestView.tsx
+++ b/Dashboard/src/Components/CodeRepository/PullRequestView.tsx
@@ -18,8 +18,11 @@ const PullRequestViewElement: FunctionComponent<ComponentProps> = (
       `https://github.com/${props.organizationName}/${props.repositoryName}/pull/${props.pullRequestId}`,
     );
     return (
-      <Link to={to} openInNewTab={true}>
-        {props.pullRequestId}
+      <Link to={to} className="hover:underline" openInNewTab={true}>
+        <>
+          <span>#</span>
+          {props.pullRequestId}
+        </>
       </Link>
     );
   }
diff --git a/Dashboard/src/Components/Copilot/LastRunMessage.tsx b/Dashboard/src/Components/Copilot/LastRunMessage.tsx
index 7187db82a4..570b7551d8 100644
--- a/Dashboard/src/Components/Copilot/LastRunMessage.tsx
+++ b/Dashboard/src/Components/Copilot/LastRunMessage.tsx
@@ -19,7 +19,7 @@ const CopilotLastRunAt: FunctionComponent<ComponentProps> = (
       {props.lastRunAt && (
         <Alert
           type={AlertType.INFO}
-          strongTitle="Last Run At: "
+          strongTitle="Copilot Last Ran At"
           title={`${OneUptimeDate.getDateAsLocalFormattedString(props.lastRunAt)}.`}
         />
       )}
diff --git a/docker-compose.base.yml b/docker-compose.base.yml
index 61fea3dc7e..eefd9c1989 100644
--- a/docker-compose.base.yml
+++ b/docker-compose.base.yml
@@ -378,6 +378,7 @@ services:
             ONEUPTIME_LLM_SERVER_URL: ${COPILOT_ONEUPTIME_LLM_SERVER_URL}
             DISABLE_COPILOT: ${DISABLE_COPILOT}
             OPENAI_API_KEY: ${COPILOT_OPENAI_API_KEY}
+            LOG_LEVEL: ${LOG_LEVEL}
         logging:
             driver: "local"
             options:
diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index ea3d8560e1..432c67bb69 100644
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -356,8 +356,6 @@ services:
         extends:
             file: ./docker-compose.base.yml
             service: copilot
-        environment:
-            - LOG_LEVEL=INFO
         build:
             network: host
             context: .